Variant report

Variant	rs6808477
Chromosome Location	chr3:70073822-70073823
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:70073016..70075432-chr3:70076119..70079002,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12171315	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13319356	0.98[AFR][1000 genomes]
rs17006655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57762086	0.98[AFR][1000 genomes]
rs59568939	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60832212	0.98[AFR][1000 genomes]
rs6769936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6783620	0.98[AFR][1000 genomes]
rs6795941	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6796351	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73836003	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73836004	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73836006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73836007	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73836008	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73836009	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73836011	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73836012	0.94[AFR][1000 genomes]
rs7648870	0.96[AFR][1000 genomes]
rs9810485	0.98[AFR][1000 genomes]
rs9822064	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9822884	0.98[AFR][1000 genomes]
rs9826015	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9860906	0.96[AFR][1000 genomes]
rs9873906	0.91[EUR][1000 genomes]
rs9879984	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv2763277	chr3:70065528-70074892	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2762335	chr3:70069112-70074892	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70063800-70098000	Weak transcription	Aorta	Aorta
2	chr3:70073000-70074200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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