Variant report
| Variant | rs9822884 |
|---|---|
| Chromosome Location | chr3:70078626-70078627 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000240405 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs12171315 | 0.93[AFR][1000 genomes] |
| rs13319356 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57762086 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59568939 | 0.94[AFR][1000 genomes] |
| rs60832212 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6769936 | 0.98[AFR][1000 genomes] |
| rs6775820 | 1.00[AMR][1000 genomes] |
| rs6783620 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6788592 | 1.00[AMR][1000 genomes] |
| rs6795941 | 0.94[AFR][1000 genomes] |
| rs6796351 | 0.94[AFR][1000 genomes] |
| rs6799782 | 1.00[AMR][1000 genomes] |
| rs6808477 | 0.98[AFR][1000 genomes] |
| rs73836003 | 0.96[AFR][1000 genomes] |
| rs73836004 | 0.96[AFR][1000 genomes] |
| rs73836006 | 0.98[AFR][1000 genomes] |
| rs73836007 | 0.94[AFR][1000 genomes] |
| rs73836008 | 0.94[AFR][1000 genomes] |
| rs73836009 | 0.94[AFR][1000 genomes] |
| rs73836011 | 0.91[AFR][1000 genomes] |
| rs73836012 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7648870 | 0.98[AFR][1000 genomes] |
| rs9810485 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9817276 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9822064 | 0.94[AFR][1000 genomes] |
| rs9826015 | 0.94[AFR][1000 genomes] |
| rs9860906 | 0.94[AFR][1000 genomes] |
| rs9866289 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9879984 | 0.94[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533396 | chr3:69964029-70538306 | Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:70063800-70098000 | Weak transcription | Aorta | Aorta |
