Variant report

Variant	rs17007279
Chromosome Location	chr4:120815863-120815864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11941722	1.00[EUR][1000 genomes]
rs17006744	1.00[EUR][1000 genomes]
rs17007365	1.00[EUR][1000 genomes]
rs17007435	1.00[EUR][1000 genomes]
rs17007908	1.00[EUR][1000 genomes]
rs6855463	1.00[EUR][1000 genomes]
rs6857703	1.00[EUR][1000 genomes]
rs72912336	1.00[EUR][1000 genomes]
rs73842772	1.00[EUR][1000 genomes]
rs73842775	1.00[EUR][1000 genomes]
rs73842779	1.00[EUR][1000 genomes]
rs7675914	1.00[EUR][1000 genomes]
rs9760020	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120815600-120816600	Enhancers	Fetal Stomach	stomach
2	chr4:120815800-120816600	Enhancers	Duodenum Smooth Muscle	Duodenum
3	chr4:120815800-120816600	Enhancers	Rectal Smooth Muscle	rectum
4	chr4:120815800-120818400	Weak transcription	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links