Variant report

Variant	rs73842775
Chromosome Location	chr4:120866898-120866899
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11941722	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17006744	1.00[EUR][1000 genomes]
rs17007279	1.00[EUR][1000 genomes]
rs17007365	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17007435	1.00[EUR][1000 genomes]
rs17007908	1.00[EUR][1000 genomes]
rs6855463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6857703	1.00[EUR][1000 genomes]
rs72912336	1.00[EUR][1000 genomes]
rs73842772	1.00[EUR][1000 genomes]
rs73842779	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7675914	1.00[EUR][1000 genomes]
rs9760020	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv879849	chr4:120823634-120922444	Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links