Variant report

Variant	rs17007946
Chromosome Location	chr2:72447036-72447037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72444661..72447286-chr2:72448718..72451197,2	MCF-7	breast:
2	chr2:72446041..72448733-chr2:72456642..72458989,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11887922	1.00[EUR][1000 genomes]
rs17007943	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57688709	1.00[EUR][1000 genomes]
rs72910353	1.00[EUR][1000 genomes]
rs72910391	1.00[EUR][1000 genomes]
rs72914183	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72432800-72456600	Weak transcription	Psoas Muscle	Psoas
2	chr2:72433000-72460600	Weak transcription	Pancreas	Pancrea
3	chr2:72433200-72450000	Weak transcription	Brain Angular Gyrus	brain
4	chr2:72433200-72450000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:72433200-72466000	Weak transcription	Right Ventricle	heart
6	chr2:72433200-72468600	Weak transcription	Right Atrium	heart
7	chr2:72433400-72450200	Weak transcription	Brain Anterior Caudate	brain
8	chr2:72438400-72449800	Weak transcription	HMEC	breast
9	chr2:72441000-72462800	Weak transcription	Left Ventricle	heart
10	chr2:72442600-72449400	Weak transcription	Osteobl	bone
11	chr2:72442800-72449800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:72443200-72450000	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:72446200-72447200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:72446200-72447200	Enhancers	HepG2	liver
15	chr2:72446200-72447400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr2:72446400-72447200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:72446400-72447600	Enhancers	A549	lung
18	chr2:72446800-72447800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr2:72447000-72447400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr2:72447000-72447800	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr2:72447000-72447800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr2:72447000-72447800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr2:72447000-72447800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr2:72447000-72450400	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links