Variant report

Variant	rs72910391
Chromosome Location	chr2:72497076-72497077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11887922	1.00[EUR][1000 genomes]
rs17007943	1.00[EUR][1000 genomes]
rs17007946	1.00[EUR][1000 genomes]
rs17008225	1.00[EUR][1000 genomes]
rs57688709	1.00[EUR][1000 genomes]
rs58925332	1.00[AMR][1000 genomes]
rs72910353	1.00[EUR][1000 genomes]
rs72914183	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72485200-72501800	Weak transcription	HSMMtube	muscle
2	chr2:72489200-72508200	Weak transcription	Aorta	Aorta
3	chr2:72490600-72497200	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:72491200-72502200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:72492200-72498200	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:72492200-72498400	Weak transcription	Brain Angular Gyrus	brain
7	chr2:72495800-72497400	Enhancers	Esophagus	oesophagus
8	chr2:72496400-72497400	Enhancers	Right Ventricle	heart
9	chr2:72496400-72497600	Enhancers	Left Ventricle	heart
10	chr2:72496400-72500000	Enhancers	Fetal Heart	heart
11	chr2:72496600-72497400	Enhancers	Psoas Muscle	Psoas
12	chr2:72496800-72497200	Weak transcription	Pancreas	Pancrea
13	chr2:72497000-72497400	Enhancers	Right Atrium	heart
14	chr2:72497000-72498200	Enhancers	A549	lung
15	chr2:72497000-72498600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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