Variant report

Variant	rs17008528
Chromosome Location	chr4:103383107-103383108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10000030	0.83[CHB][hapmap]
rs10014309	0.83[CHB][hapmap]
rs1038000	0.83[CHB][hapmap]
rs17032641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6821848	1.00[CEU][hapmap];0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966302	chr4:103382434-103384860	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
2	esv3322009	chr4:103383028-103387326	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103381400-103387600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:103383000-103383600	ZNF genes & repeats	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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