Variant report

Variant	rs17008963
Chromosome Location	chr2:73568214-73568215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11883989	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11883997	1.00[EUR][1000 genomes]
rs11893899	1.00[EUR][1000 genomes]
rs13422480	1.00[MEX][hapmap]
rs28730851	1.00[EUR][1000 genomes]
rs58830031	1.00[EUR][1000 genomes]
rs59084267	1.00[EUR][1000 genomes]
rs59369402	1.00[EUR][1000 genomes]
rs60303012	1.00[EUR][1000 genomes]
rs61736516	1.00[EUR][1000 genomes]
rs6735006	1.00[EUR][1000 genomes]
rs6736726	1.00[EUR][1000 genomes]
rs6753922	1.00[EUR][1000 genomes]
rs7563864	1.00[EUR][1000 genomes]
rs7571243	1.00[EUR][1000 genomes]
rs7573464	1.00[EUR][1000 genomes]
rs7597166	1.00[EUR][1000 genomes]
rs7600268	1.00[EUR][1000 genomes]
rs7602957	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013190	chr2:73489679-73572643	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73568200-73568400	Bivalent Enhancer	HepG2	liver
2	chr2:73568200-73568600	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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