Variant report

Variant	rs17008999
Chromosome Location	chr4:85404643-85404644
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11936338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11947114	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17008741	1.00[EUR][1000 genomes]
rs17008897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17008931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17008954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17008957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17009011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1899954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55869590	0.89[ASN][1000 genomes]
rs59749188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73831495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73831500	0.89[ASN][1000 genomes]
rs73834304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73834306	0.89[ASN][1000 genomes]
rs73834309	1.00[EUR][1000 genomes]
rs73834310	1.00[EUR][1000 genomes]
rs7670936	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85402000-85405000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
2	chr4:85402400-85404800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
3	chr4:85402400-85405000	Bivalent Enhancer	Fetal Heart	heart
4	chr4:85402400-85405400	Bivalent Enhancer	Fetal Muscle Leg	muscle
5	chr4:85402600-85405200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
6	chr4:85402800-85405000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr4:85403200-85405800	ZNF genes & repeats	Lung	lung
8	chr4:85403400-85404800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
9	chr4:85403400-85411600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:85403800-85404800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
11	chr4:85403800-85404800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
12	chr4:85403800-85405000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
13	chr4:85403800-85405000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
14	chr4:85403800-85405200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr4:85404000-85405000	Bivalent Enhancer	Left Ventricle	heart
16	chr4:85404000-85405000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
17	chr4:85404000-85405000	Bivalent/Poised TSS	NHEK	skin
18	chr4:85404200-85405000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:85404200-85405000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
20	chr4:85404200-85405000	Bivalent Enhancer	Fetal Intestine Small	intestine
21	chr4:85404200-85405000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
22	chr4:85404200-85405400	Bivalent Enhancer	Liver	Liver
23	chr4:85404200-85405400	Bivalent Enhancer	Fetal Stomach	stomach
24	chr4:85404400-85404800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
25	chr4:85404400-85404800	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
26	chr4:85404400-85404800	Bivalent Enhancer	Brain Substantia Nigra	brain
27	chr4:85404400-85404800	Bivalent Enhancer	Colon Smooth Muscle	Colon
28	chr4:85404400-85404800	Bivalent Enhancer	NHDF-Ad	bronchial
29	chr4:85404400-85405000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
30	chr4:85404400-85405000	Bivalent Enhancer	Fetal Lung	lung
31	chr4:85404400-85405200	Enhancers	Gastric	stomach
32	chr4:85404400-85405200	Bivalent Enhancer	Spleen	Spleen
33	chr4:85404400-85405800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:85404600-85404800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
35	chr4:85404600-85404800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr4:85404600-85404800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr4:85404600-85404800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr4:85404600-85404800	Bivalent Enhancer	Rectal Smooth Muscle	rectum
39	chr4:85404600-85404800	Flanking Bivalent TSS/Enh	Right Ventricle	heart
40	chr4:85404600-85404800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
41	chr4:85404600-85405000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
42	chr4:85404600-85405000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:85404600-85405000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:85404600-85405000	Bivalent Enhancer	Duodenum Mucosa	Duodenum
45	chr4:85404600-85405000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
46	chr4:85404600-85405000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
47	chr4:85404600-85405000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
48	chr4:85404600-85405200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr4:85404600-85405200	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
50	chr4:85404600-85405400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell

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