Variant report

Variant	rs7670936
Chromosome Location	chr4:85414320-85414321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85413476..85415054-chr4:85417811..85419737,2	K562	blood:

Variant related genes	Relation type
ENSG00000163623	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10014792	1.00[EUR][1000 genomes]
rs11936338	0.87[ASN][1000 genomes]
rs11947114	0.87[ASN][1000 genomes]
rs17008897	0.87[ASN][1000 genomes]
rs17008931	0.87[ASN][1000 genomes]
rs17008954	0.87[ASN][1000 genomes]
rs17008957	0.87[ASN][1000 genomes]
rs17009011	1.00[ASN][1000 genomes]
rs1899954	0.87[ASN][1000 genomes]
rs55869590	0.87[ASN][1000 genomes]
rs59749188	0.87[ASN][1000 genomes]
rs73831495	0.87[ASN][1000 genomes]
rs73831500	0.87[ASN][1000 genomes]
rs73834304	0.87[ASN][1000 genomes]
rs73834306	0.87[ASN][1000 genomes]
rs73834309	1.00[ASN][1000 genomes]
rs73834310	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85413000-85415000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr4:85413400-85414800	Bivalent Enhancer	Lung	lung
3	chr4:85413600-85414400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
4	chr4:85413600-85414600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:85413600-85414800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr4:85413600-85415000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
7	chr4:85413600-85415000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
8	chr4:85413600-85415200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
9	chr4:85413600-85415200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
10	chr4:85413800-85414400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:85413800-85414600	Bivalent Enhancer	Fetal Lung	lung
12	chr4:85413800-85414600	Bivalent Enhancer	Fetal Stomach	stomach
13	chr4:85413800-85414800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr4:85413800-85414800	Bivalent Enhancer	Placenta	Placenta
15	chr4:85413800-85415000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr4:85413800-85415000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
17	chr4:85413800-85415200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:85413800-85415200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
19	chr4:85413800-85415200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
20	chr4:85414000-85414400	Bivalent Enhancer	Primary B cells from cord blood	blood
21	chr4:85414000-85414400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:85414000-85414400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr4:85414000-85414400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:85414000-85414400	Bivalent Enhancer	Fetal Heart	heart
25	chr4:85414000-85414400	Bivalent/Poised TSS	Ovary	ovary
26	chr4:85414000-85414400	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
27	chr4:85414000-85414400	Flanking Bivalent TSS/Enh	A549	lung
28	chr4:85414000-85414600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
29	chr4:85414000-85414600	Bivalent Enhancer	Adipose Nuclei	Adipose
30	chr4:85414000-85414600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
31	chr4:85414000-85414600	Bivalent Enhancer	Fetal Brain Male	brain
32	chr4:85414000-85414600	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
33	chr4:85414000-85414600	Bivalent Enhancer	NH-A	brain
34	chr4:85414000-85414800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr4:85414000-85414800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
36	chr4:85414000-85414800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
37	chr4:85414000-85414800	Bivalent Enhancer	Liver	Liver
38	chr4:85414000-85414800	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
39	chr4:85414000-85414800	Flanking Active TSS	Pancreas	Pancrea
40	chr4:85414000-85415000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr4:85414000-85415000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
42	chr4:85414000-85415000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
43	chr4:85414000-85415000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr4:85414000-85415000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr4:85414000-85415000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:85414000-85415000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr4:85414000-85415000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
48	chr4:85414000-85415000	Bivalent Enhancer	Fetal Muscle Leg	muscle
49	chr4:85414000-85415000	Bivalent Enhancer	Left Ventricle	heart
50	chr4:85414000-85415000	Flanking Active TSS	Right Ventricle	heart

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