Variant report

Variant	rs10014792
Chromosome Location	chr4:85536148-85536149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85535638..85537405-chr4:85537938..85540350,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11929910	0.91[YRI][hapmap]
rs1372971	0.83[ASW][hapmap];0.83[YRI][hapmap]
rs7659340	0.91[YRI][hapmap]
rs7670936	1.00[EUR][1000 genomes]
rs9784491	0.83[ASW][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830333	chr4:85520643-85545644	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85515400-85544400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:85518600-85536200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:85518600-85574800	Weak transcription	Stomach Mucosa	stomach
4	chr4:85520400-85559400	Weak transcription	Fetal Heart	heart
5	chr4:85524600-85536400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:85524600-85536400	Weak transcription	Esophagus	oesophagus
7	chr4:85525000-85564200	Weak transcription	Placenta	Placenta
8	chr4:85526800-85583000	Weak transcription	Gastric	stomach
9	chr4:85528200-85548200	Weak transcription	Colonic Mucosa	Colon
10	chr4:85528400-85564000	Weak transcription	Fetal Kidney	kidney
11	chr4:85529400-85581600	Weak transcription	Ovary	ovary
12	chr4:85529600-85587600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:85531400-85536400	Weak transcription	Fetal Stomach	stomach
14	chr4:85531800-85536200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:85531800-85536200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:85532000-85538000	Weak transcription	Brain Anterior Caudate	brain
17	chr4:85532200-85544200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:85532400-85536600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:85532400-85538400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr4:85532400-85540400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr4:85532400-85556800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:85532400-85571200	Weak transcription	Pancreas	Pancrea
23	chr4:85532600-85538000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr4:85532600-85538000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr4:85532600-85538000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr4:85532600-85540600	Weak transcription	Fetal Intestine Large	intestine
27	chr4:85533200-85536200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:85533200-85536400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:85533200-85541400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr4:85533600-85536800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr4:85533800-85536400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:85535400-85536400	Weak transcription	Fetal Intestine Small	intestine
33	chr4:85536000-85536200	Enhancers	Left Ventricle	heart
34	chr4:85536000-85536600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr4:85536000-85536600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr4:85536000-85536600	Genic enhancers	HMEC	breast
37	chr4:85536000-85536600	Genic enhancers	NHEK	skin
38	chr4:85536000-85536800	Strong transcription	Duodenum Mucosa	Duodenum

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