Variant report

Variant	rs11929910
Chromosome Location	chr4:85517883-85517884
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:85516667..85518357-chr4:85520389..85522832,2	K562	blood:
2	chr4:85503832..85505734-chr4:85515107..85517969,2	K562	blood:
3	chr4:85510318..85512988-chr4:85516693..85519474,2	MCF-7	breast:
4	chr4:85503009..85505849-chr4:85516310..85519703,4	MCF-7	breast:
5	chr4:85502546..85505934-chr4:85516505..85519420,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163624	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10014792	0.91[YRI][hapmap]
rs1020278	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10446695	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10776519	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11097023	0.84[CEU][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11099651	0.83[AMR][1000 genomes]
rs11099652	0.83[AMR][1000 genomes]
rs11099653	0.81[AMR][1000 genomes]
rs11725539	0.85[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12108575	0.85[EUR][1000 genomes]
rs12509774	0.81[AMR][1000 genomes]
rs12648523	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13102661	0.92[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs1372971	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs1443074	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs2165786	0.92[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2868914	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2868915	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2868917	0.83[JPT][hapmap]
rs2868919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2868920	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs35227341	0.81[AMR][1000 genomes]
rs35909314	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4449405	0.84[CEU][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4533768	0.81[AMR][1000 genomes]
rs4568237	0.83[EUR][1000 genomes]
rs6535544	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6829806	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs7657036	0.81[AMR][1000 genomes]
rs7657224	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7659340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7677285	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7678115	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7678268	0.80[AMR][1000 genomes]
rs9784491	0.92[CEU][hapmap];0.86[CHB][hapmap];0.91[YRI][hapmap]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85507800-85518000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:85508800-85531000	Weak transcription	Pancreas	Pancrea
3	chr4:85511600-85518400	Enhancers	Fetal Heart	heart
4	chr4:85512000-85531000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:85514800-85519000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:85514800-85520000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:85515400-85518000	Weak transcription	Stomach Mucosa	stomach
8	chr4:85515400-85544400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:85515800-85530600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:85516000-85520400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:85516600-85519800	Weak transcription	Fetal Intestine Large	intestine
12	chr4:85516600-85520000	Weak transcription	Fetal Intestine Small	intestine
13	chr4:85517000-85519600	Enhancers	NHEK	skin
14	chr4:85517200-85518000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr4:85517200-85518200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr4:85517200-85519000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:85517400-85520200	Enhancers	HMEC	breast
18	chr4:85517600-85518000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr4:85517600-85518600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr4:85517600-85518600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr4:85517600-85518800	Enhancers	K562	blood
22	chr4:85517600-85519000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr4:85517800-85518800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr4:85517800-85519200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:85517800-85531400	Weak transcription	H9 Cell Line	embryonic stem cell

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