Variant report

Variant	rs7677285
Chromosome Location	chr4:85511637-85511638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85502965..85505711-chr4:85510072..85512009,4	MCF-7	breast:
2	chr4:85510318..85512988-chr4:85516693..85519474,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163624	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1020278	0.96[CEU][hapmap];0.86[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10446695	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10776519	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11097023	0.88[CEU][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11725539	0.89[CEU][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11733870	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11929910	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12108575	0.83[EUR][1000 genomes]
rs12648523	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13102661	0.89[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs1372971	0.89[CEU][hapmap];0.86[CHB][hapmap]
rs1443074	0.89[CEU][hapmap];0.86[CHB][hapmap]
rs2165786	0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28527489	0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs2868914	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2868915	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2868916	0.86[AMR][1000 genomes]
rs2868917	0.82[JPT][hapmap];0.86[AMR][1000 genomes]
rs2868919	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs2868920	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs35909314	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4449405	0.88[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4568237	0.82[EUR][1000 genomes]
rs6535544	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6829806	0.89[CEU][hapmap];0.86[CHB][hapmap]
rs7657224	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7659340	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7678115	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9784491	0.89[CEU][hapmap];0.86[CHB][hapmap]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85507200-85513000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:85507800-85516000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:85507800-85518000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:85508000-85514000	Weak transcription	Stomach Mucosa	stomach
5	chr4:85508800-85531000	Weak transcription	Pancreas	Pancrea
6	chr4:85509400-85514000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:85509400-85514600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:85510000-85516200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:85510200-85511800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:85510200-85511800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:85511200-85512000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:85511200-85512000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr4:85511200-85516600	Enhancers	Fetal Intestine Large	intestine
14	chr4:85511200-85516600	Enhancers	Fetal Intestine Small	intestine
15	chr4:85511400-85511800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr4:85511400-85512200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr4:85511600-85511800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr4:85511600-85512000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:85511600-85512000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr4:85511600-85512000	Enhancers	NHEK	skin
21	chr4:85511600-85518400	Enhancers	Fetal Heart	heart

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