Variant report

Variant	rs11725539
Chromosome Location	chr4:85509149-85509150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85507022..85509275-chr4:85518099..85519750,2	K562	blood:
2	chr4:85504176..85506682-chr4:85507620..85509529,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163624	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1020278	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10446695	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10776519	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11097023	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11099651	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11099652	0.87[AMR][1000 genomes]
rs11099653	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11733870	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11929910	0.85[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12509774	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12648523	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2868914	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2868915	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2868916	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2868917	0.82[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2868919	0.85[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs2868920	0.89[JPT][hapmap]
rs35227341	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35909314	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4449405	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4533768	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6535544	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7657036	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7657224	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7659340	0.86[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7677285	0.89[CEU][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7678115	0.88[EUR][1000 genomes]
rs7678268	0.83[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85505200-85509200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:85505200-85511400	Weak transcription	Ovary	ovary
3	chr4:85505800-85511200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:85505800-85511600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:85507200-85509200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:85507200-85509200	Weak transcription	NHEK	skin
7	chr4:85507200-85513000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:85507400-85509200	Enhancers	Fetal Intestine Small	intestine
9	chr4:85507800-85509200	Weak transcription	Esophagus	oesophagus
10	chr4:85507800-85516000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:85507800-85518000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:85508000-85509600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:85508000-85511600	Weak transcription	Fetal Heart	heart
14	chr4:85508000-85514000	Weak transcription	Stomach Mucosa	stomach
15	chr4:85508600-85509200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:85508600-85509400	Genic enhancers	H9 Cell Line	embryonic stem cell
17	chr4:85508600-85510400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
18	chr4:85508800-85509600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr4:85508800-85509600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:85508800-85531000	Weak transcription	Pancreas	Pancrea
21	chr4:85509000-85510200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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