Variant report

Variant	rs7678268
Chromosome Location	chr4:85484714-85484715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:85483839..85485531-chr4:85502643..85504902,2	MCF-7	breast:
2	chr4:85479030..85482088-chr4:85483227..85486153,3	K562	blood:
3	chr4:85483371..85486524-chr4:85499401..85503831,3	MCF-7	breast:
4	chr4:85483142..85485554-chr4:85491357..85493082,2	MCF-7	breast:
5	chr4:85484577..85487410-chr4:85489203..85491080,2	K562	blood:

Variant related genes	Relation type
ENSG00000163624	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10776519	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11097023	0.81[CEU][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11099651	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099652	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11099653	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11725539	0.83[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11733870	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11929910	0.80[AMR][1000 genomes]
rs12509774	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12648523	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2868914	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2868915	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2868916	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2868917	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2868919	0.83[JPT][hapmap]
rs2868920	0.85[CEU][hapmap];0.83[JPT][hapmap]
rs35227341	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35909314	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4449405	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4533768	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535544	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7657036	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7657224	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7659340	0.80[AMR][1000 genomes]
rs7699871	0.93[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85483000-85489600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:85484000-85484800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:85484000-85485800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:85484000-85485800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr4:85484200-85485400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:85484200-85485400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:85484200-85486800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:85484200-85491400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:85484400-85485200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:85484400-85486800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:85484600-85485400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:85484600-85485400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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