Variant report

Variant	rs11099653
Chromosome Location	chr4:85490497-85490498
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:85485621..85488244-chr4:85490405..85493173,2	MCF-7	breast:
2	chr4:85484577..85487410-chr4:85489203..85491080,2	K562	blood:
3	chr4:85490056..85493038-chr4:85496347..85498116,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10776519	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11097023	0.81[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11099651	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11099652	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11725539	0.83[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11733870	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11929910	0.81[AMR][1000 genomes]
rs12509774	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12648523	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2868914	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2868915	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2868916	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2868917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2868919	0.83[JPT][hapmap]
rs2868920	0.85[CEU][hapmap];0.83[JPT][hapmap]
rs35227341	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35909314	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4449405	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4533768	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6535544	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7657036	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7657224	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7659340	0.81[AMR][1000 genomes]
rs7678268	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7699871	0.91[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85484200-85491400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:85487600-85491200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr4:85489200-85491000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:85489200-85491200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:85489400-85490800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:85489600-85490600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr4:85489600-85490600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:85489600-85490600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:85489600-85490600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:85489600-85490600	Enhancers	HSMMtube	muscle
11	chr4:85489600-85491400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:85489800-85490600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr4:85489800-85503400	Weak transcription	Lung	lung
14	chr4:85490000-85494800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:85490000-85500400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:85490200-85491000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr4:85490400-85490600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr4:85490400-85494800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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