Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:85479030..85482088-chr4:85483227..85486153,3	K562	blood:
2	chr4:85483371..85486524-chr4:85499401..85503831,3	MCF-7	breast:
3	chr4:85483142..85485554-chr4:85491357..85493082,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10776519	0.92[ASN][1000 genomes]
rs11097023	0.89[JPT][hapmap]
rs11099651	0.93[ASN][1000 genomes]
rs11099652	0.92[ASN][1000 genomes]
rs11099653	0.91[ASN][1000 genomes]
rs11725539	0.89[JPT][hapmap]
rs12509774	0.93[ASN][1000 genomes]
rs12648523	0.91[ASN][1000 genomes]
rs2868914	0.90[ASN][1000 genomes]
rs2868915	0.90[ASN][1000 genomes]
rs2868916	0.90[ASN][1000 genomes]
rs2868917	0.82[CHB][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs35227341	0.91[ASN][1000 genomes]
rs35909314	0.90[ASN][1000 genomes]
rs4449405	0.91[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs4533768	0.93[ASN][1000 genomes]
rs6535544	0.94[ASN][1000 genomes]
rs7657036	0.93[ASN][1000 genomes]
rs7657224	0.92[ASN][1000 genomes]
rs7678268	0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.93[ASN][1000 genomes]
rs974130	0.80[CEU][hapmap];0.81[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7699871	ARHGAP24	cis	parietal	SCAN
rs7699871	NCRNA00247	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85481400-85484200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:85482200-85484600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:85482600-85484200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:85483000-85484000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:85483000-85484000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:85483000-85484200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:85483000-85489600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:85483200-85484000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr4:85483200-85484000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr4:85483400-85483600	Enhancers	Placenta	Placenta
11	chr4:85483400-85484000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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