Variant report

Variant	rs10776519
Chromosome Location	chr4:85491267-85491268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85485621..85488244-chr4:85490405..85493173,2	MCF-7	breast:
2	chr4:85490056..85493038-chr4:85496347..85498116,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1020278	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs10446695	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs11097023	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11099651	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11099652	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11099653	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11725539	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11733870	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11929910	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12509774	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12648523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2868914	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2868915	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2868916	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2868917	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2868919	0.84[CEU][hapmap]
rs35227341	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35909314	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4449405	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4533768	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6535544	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7657036	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7657224	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7659340	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7677285	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7678115	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7678268	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7699871	0.92[ASN][1000 genomes]
rs974130	0.83[CHB][hapmap]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85484200-85491400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:85489600-85491400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:85489800-85503400	Weak transcription	Lung	lung
4	chr4:85490000-85494800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:85490000-85500400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:85490400-85494800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:85490600-85495000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:85490600-85495000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:85490600-85495000	Weak transcription	HSMMtube	muscle
10	chr4:85490600-85500200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:85490600-85500600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr4:85490600-85501200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:85490800-85500200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:85491000-85493600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr4:85491000-85500000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:85491200-85493400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr4:85491200-85493400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links