Variant report

Variant	rs2868916
Chromosome Location	chr4:85497321-85497322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85493510..85497718-chr4:85498470..85501665,5	MCF-7	breast:
2	chr4:85490056..85493038-chr4:85496347..85498116,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10776519	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11097023	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11099651	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11099652	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11099653	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11725539	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11733870	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12509774	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12648523	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2868914	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2868915	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2868917	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35227341	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35909314	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4449405	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4533768	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6535544	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7657036	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7657224	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7677285	0.86[AMR][1000 genomes]
rs7678268	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7699871	0.90[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85489800-85503400	Weak transcription	Lung	lung
2	chr4:85490000-85500400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:85490600-85500200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:85490600-85500600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:85490600-85501200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:85490800-85500200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:85491000-85500000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:85493600-85500000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:85495400-85500000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:85495600-85500000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:85495600-85500400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:85495600-85503400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr4:85495600-85503400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr4:85495800-85500000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr4:85495800-85500000	Weak transcription	HMEC	breast
16	chr4:85495800-85500200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr4:85495800-85500200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:85495800-85500200	Weak transcription	NHEK	skin
19	chr4:85495800-85502200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr4:85495800-85503400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr4:85496000-85500200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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