Variant report

Variant	rs7657036
Chromosome Location	chr4:85486941-85486942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85485621..85488244-chr4:85490405..85493173,2	MCF-7	breast:
2	chr4:85484577..85487410-chr4:85489203..85491080,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1020278	0.83[MEX][hapmap]
rs10776519	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11097023	0.81[CEU][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11099651	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099652	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11099653	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11725539	0.82[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11733870	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11929910	0.83[JPT][hapmap];0.81[AMR][1000 genomes]
rs12509774	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12648523	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13102661	0.83[MEX][hapmap]
rs1372971	0.83[MEX][hapmap]
rs2868914	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2868915	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2868916	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2868917	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2868919	0.83[JPT][hapmap]
rs2868920	0.85[CEU][hapmap];0.86[GIH][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap]
rs35227341	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35909314	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4449405	0.81[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4533768	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535544	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6829806	0.83[MEX][hapmap]
rs7657224	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7659340	0.83[JPT][hapmap];0.81[AMR][1000 genomes]
rs7677285	0.82[JPT][hapmap]
rs7678268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699871	0.93[ASN][1000 genomes]
rs9784491	0.83[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7657036	NCRNA00247	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85483000-85489600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:85484200-85491400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:85484800-85488000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:85486000-85487000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr4:85486200-85487400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
6	chr4:85486400-85487000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr4:85486400-85487200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr4:85486400-85488400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:85486600-85487400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:85486800-85487200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr4:85486800-85489800	Weak transcription	H1 Cell Line	embryonic stem cell

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