Variant report

Variant	rs17009043
Chromosome Location	chr3:21605723-21605724
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6788278	1.00[AMR][1000 genomes]
rs73820942	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426590	chr3:21593997-21613071	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21593000-21606800	Weak transcription	K562	blood
2	chr3:21596400-21606800	Weak transcription	Psoas Muscle	Psoas
3	chr3:21599600-21607000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:21600800-21606800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:21600800-21607000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:21603000-21606200	Weak transcription	Fetal Stomach	stomach
7	chr3:21603200-21634400	Weak transcription	Left Ventricle	heart
8	chr3:21604000-21608200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:21604600-21606600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:21605400-21609000	Weak transcription	Aorta	Aorta
11	chr3:21605600-21607200	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:21605600-21617400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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