Variant report

Variant	rs17009100
Chromosome Location	chr3:21634204-21634205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11705760	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17009103	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1824214	0.81[YRI][hapmap]
rs28625100	0.85[ASN][1000 genomes]
rs34861851	0.81[ASN][1000 genomes]
rs3901771	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58466369	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62236138	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62237368	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6776046	0.87[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9822059	0.84[CHD][hapmap]
rs9841949	0.84[CHD][hapmap]
rs9859649	0.81[CHB][hapmap];0.84[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv589895	chr3:21622387-21638815	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1003451	chr3:21623631-21662267	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv997373	chr3:21624940-21646812	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21603200-21634400	Weak transcription	Left Ventricle	heart
2	chr3:21618400-21643200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:21622800-21634400	Weak transcription	Aorta	Aorta
4	chr3:21625000-21655200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:21634200-21660200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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