Variant report

Variant	rs17009351
Chromosome Location	chr2:30520479-30520480
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10209384	1.00[CHB][hapmap]
rs11127272	1.00[EUR][1000 genomes]
rs12468378	1.00[ASN][1000 genomes]
rs13405267	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1876818	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1876819	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2055781	1.00[ASN][1000 genomes]
rs2055783	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4324357	1.00[EUR][1000 genomes]
rs4328679	1.00[EUR][1000 genomes]
rs4352268	1.00[EUR][1000 genomes]
rs56917916	1.00[EUR][1000 genomes]
rs57627825	1.00[EUR][1000 genomes]
rs61679945	1.00[ASN][1000 genomes]
rs6726021	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6736034	1.00[CHB][hapmap]
rs6741590	1.00[EUR][1000 genomes]
rs6752917	1.00[EUR][1000 genomes]
rs72865603	1.00[EUR][1000 genomes]
rs73923292	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73923294	1.00[ASN][1000 genomes]
rs73925128	1.00[EUR][1000 genomes]
rs7590947	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv833648	chr2:30505882-30696275	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv3421324	chr2:30517948-30522246	Weak transcription Enhancers ZNF genes & repeats Genic enhancers	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30496600-30524200	Weak transcription	Right Atrium	heart
2	chr2:30511200-30523200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:30513800-30522800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:30513800-30523400	Weak transcription	Thymus	Thymus
5	chr2:30514000-30522800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:30516600-30522600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:30516600-30522800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:30516800-30522000	Weak transcription	Left Ventricle	heart
9	chr2:30516800-30522600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr2:30516800-30523000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:30516800-30524200	Weak transcription	Lung	lung
12	chr2:30517000-30520600	Weak transcription	Primary B cells from cord blood	blood
13	chr2:30517000-30521000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr2:30517000-30522200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr2:30517200-30522600	Weak transcription	HSMMtube	muscle
16	chr2:30517400-30522800	Weak transcription	NHLF	lung
17	chr2:30518000-30522800	Weak transcription	NH-A	brain
18	chr2:30518200-30524600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:30519400-30522800	Weak transcription	Right Ventricle	heart
20	chr2:30519800-30520800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr2:30519800-30523000	Weak transcription	K562	blood
22	chr2:30520000-30522200	Enhancers	Primary B cells from peripheral blood	blood
23	chr2:30520200-30522600	Enhancers	Fetal Heart	heart
24	chr2:30520400-30520800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links