Variant report

Variant	rs2055781
Chromosome Location	chr2:30428055-30428056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12468378	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13405267	1.00[ASN][1000 genomes]
rs17009351	1.00[ASN][1000 genomes]
rs1876818	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1876819	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2055783	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61679945	1.00[ASN][1000 genomes]
rs6726021	1.00[ASN][1000 genomes]
rs6747319	0.85[AFR][1000 genomes]
rs73923292	1.00[ASN][1000 genomes]
rs73923294	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1002657	chr2:30339312-30516535	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv873768	chr2:30403762-30436249	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30415000-30431400	Weak transcription	Right Atrium	heart
2	chr2:30423800-30431400	Weak transcription	Fetal Stomach	stomach
3	chr2:30424400-30428600	Enhancers	Adipose Nuclei	Adipose
4	chr2:30425200-30429600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:30425200-30431400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr2:30425400-30429600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:30426400-30431400	Weak transcription	Brain Hippocampus Middle	brain
8	chr2:30426400-30431400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr2:30426400-30439800	Weak transcription	Right Ventricle	heart
10	chr2:30426600-30431400	Weak transcription	Colon Smooth Muscle	Colon
11	chr2:30426800-30429800	Weak transcription	Primary T cells from cord blood	blood
12	chr2:30427200-30430000	Enhancers	Fetal Heart	heart
13	chr2:30427800-30428400	Enhancers	Fetal Lung	lung
14	chr2:30427800-30428600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr2:30427800-30428600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
16	chr2:30428000-30436200	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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