Variant report

Variant	rs17009575
Chromosome Location	chr10:50421264-50421265
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11101001	0.90[JPT][hapmap]
rs12571488	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12573075	0.92[ASN][1000 genomes]
rs12769447	0.81[EUR][1000 genomes]
rs12770471	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17176211	0.91[JPT][hapmap]
rs17783145	0.90[ASN][1000 genomes]
rs36118901	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71500271	0.88[EUR][1000 genomes]
rs72790614	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50420000-50421600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr10:50420000-50421600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:50420000-50421600	Enhancers	K562	blood
4	chr10:50420200-50421600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:50420200-50421600	Enhancers	Fetal Thymus	thymus
6	chr10:50421000-50421400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:50421000-50421400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:50421000-50421400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr10:50421200-50421400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:50421200-50422000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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