Variant report

Variant	rs17783145
Chromosome Location	chr10:50449354-50449355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11101001	0.90[JPT][hapmap]
rs11592541	1.00[YRI][hapmap]
rs11597087	1.00[YRI][hapmap]
rs12573075	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12770471	0.94[ASN][1000 genomes]
rs17009575	0.90[ASN][1000 genomes]
rs17176211	0.91[JPT][hapmap];1.00[EUR][1000 genomes]
rs36118901	0.96[ASN][1000 genomes]
rs72790614	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50445200-50449800	Weak transcription	K562	blood
2	chr10:50445600-50450200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr10:50447600-50452400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:50447600-50453000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:50447800-50450000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:50448400-50449600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:50448400-50449800	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:50448600-50449400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr10:50448800-50449400	Enhancers	HSMMtube	muscle
10	chr10:50448800-50450400	Enhancers	Fetal Stomach	stomach
11	chr10:50449000-50451000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:50449000-50451000	Enhancers	Fetal Muscle Trunk	muscle
13	chr10:50449000-50451200	Enhancers	Fetal Muscle Leg	muscle
14	chr10:50449000-50451400	Enhancers	Left Ventricle	heart
15	chr10:50449000-50451400	Enhancers	Right Atrium	heart
16	chr10:50449000-50451600	Enhancers	Fetal Heart	heart
17	chr10:50449000-50451600	Enhancers	Right Ventricle	heart
18	chr10:50449200-50449600	Enhancers	Primary B cells from cord blood	blood
19	chr10:50449200-50450000	Enhancers	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links