Variant report

Variant	rs17009659
Chromosome Location	chr10:50469456-50469457
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17009661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17009842	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2377980	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4488119	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301681	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301700	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303708	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303712	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303713	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303722	0.86[AFR][1000 genomes]
rs73308768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73308770	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50463000-50478800	Weak transcription	Right Atrium	heart
2	chr10:50463200-50470400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:50464200-50472000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:50467000-50470200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:50469400-50470600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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