Variant report

Variant	rs73303712
Chromosome Location	chr10:50478036-50478037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17009659	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17009661	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17009842	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2377980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4488119	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301681	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303722	1.00[AFR][1000 genomes]
rs73308768	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73308770	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50463000-50478800	Weak transcription	Right Atrium	heart
2	chr10:50470800-50480800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:50477800-50478600	Weak transcription	Psoas Muscle	Psoas
4	chr10:50477800-50480400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:50478000-50478200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr10:50478000-50480600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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