Variant report

Variant	rs17010167
Chromosome Location	chr1:221662169-221662170
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11118737	0.84[JPT][hapmap]
rs11118740	1.00[YRI][hapmap]
rs12563549	1.00[AMR][1000 genomes]
rs12565312	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1585327	0.84[JPT][hapmap]
rs17010062	0.97[ASN][1000 genomes]
rs17010134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17010220	0.87[ASN][1000 genomes]
rs3101193	0.87[AMR][1000 genomes]
rs3101195	0.87[AMR][1000 genomes]
rs3101198	0.87[AMR][1000 genomes]
rs3131535	0.87[AMR][1000 genomes]
rs56015767	0.97[ASN][1000 genomes]
rs56205442	0.87[ASN][1000 genomes]
rs57205860	0.94[ASN][1000 genomes]
rs73100432	1.00[AMR][1000 genomes]
rs74144285	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221652200-221669000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:221659800-221662800	Enhancers	Hela-S3	cervix
3	chr1:221660400-221662800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:221661000-221662200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr1:221661000-221662400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr1:221661600-221662200	Enhancers	A549	lung
7	chr1:221662000-221667800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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