Variant report

Variant	rs3131535
Chromosome Location	chr1:221581961-221581962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10779435	0.97[ASN][1000 genomes]
rs12563549	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17010134	0.87[AMR][1000 genomes]
rs17010167	0.87[AMR][1000 genomes]
rs3101193	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101194	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3101195	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3101198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3101201	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3131534	1.00[ASN][1000 genomes]
rs3131538	0.97[ASN][1000 genomes]
rs3131539	0.96[ASN][1000 genomes]
rs73100432	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9659195	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221580800-221582000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr1:221580800-221582400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr1:221581000-221583400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:221581200-221582200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:221581400-221582000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:221581400-221582600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:221581600-221582000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr1:221581600-221582000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr1:221581600-221582200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr1:221581800-221582600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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