Variant report

Variant	rs3131538
Chromosome Location	chr1:221588169-221588170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10779435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12563549	0.94[ASN][1000 genomes]
rs3101193	0.97[ASN][1000 genomes]
rs3101194	1.00[ASN][1000 genomes]
rs3101195	1.00[ASN][1000 genomes]
rs3101198	0.99[ASN][1000 genomes]
rs3101201	0.90[ASN][1000 genomes]
rs3131534	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3131535	0.97[ASN][1000 genomes]
rs3131539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73100432	0.96[ASN][1000 genomes]
rs9659195	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3131538	DUSP10	cis	cerebellum	SCAN
rs3131538	SLC30A10	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221582600-221589000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:221586600-221593800	Enhancers	Hela-S3	cervix
3	chr1:221587800-221588400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:221587800-221590400	Enhancers	HUVEC	blood vessel
5	chr1:221588000-221588400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:221588000-221588400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:221588000-221588600	Enhancers	Placenta	Placenta
8	chr1:221588000-221589800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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