Variant report

Variant	rs17010338
Chromosome Location	chr2:31024896-31024897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:31022464..31025288-chr2:31025313..31027644,3	MCF-7	breast:
2	chr16:88870661..88873089-chr2:31024319..31026555,2	MCF-7	breast:
3	chr2:31024088..31026877-chr2:31028712..31030358,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162949	Chromatin interaction
ENSG00000167513	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6728039	0.83[AMR][1000 genomes]
rs6734715	1.00[AMR][1000 genomes]
rs6740888	1.00[AMR][1000 genomes]
rs6749250	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv833659	chr2:31020572-31171505	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv275432	chr2:31023062-31027510	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31020600-31029200	Weak transcription	Fetal Intestine Small	intestine
2	chr2:31020800-31026200	Weak transcription	Right Ventricle	heart
3	chr2:31020800-31030600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr2:31021400-31025800	Weak transcription	Esophagus	oesophagus
5	chr2:31021600-31025800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr2:31021800-31026200	Weak transcription	Left Ventricle	heart
7	chr2:31021800-31029200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:31022000-31026200	Weak transcription	Brain Angular Gyrus	brain
9	chr2:31022200-31025800	Weak transcription	Brain Substantia Nigra	brain
10	chr2:31022200-31026000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:31022200-31029200	Weak transcription	Fetal Stomach	stomach
12	chr2:31022400-31025600	Weak transcription	Lung	lung
13	chr2:31022400-31026000	Weak transcription	Brain Anterior Caudate	brain
14	chr2:31022400-31026000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:31022400-31026200	Weak transcription	Pancreas	Pancrea
16	chr2:31022400-31029600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr2:31022400-31029800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr2:31022600-31025600	Weak transcription	Gastric	stomach
19	chr2:31022600-31026000	Weak transcription	Brain Hippocampus Middle	brain
20	chr2:31022600-31029000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr2:31022600-31030400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr2:31023400-31026600	Weak transcription	Stomach Mucosa	stomach
23	chr2:31024600-31025000	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell

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