Variant report

Variant	rs6728039
Chromosome Location	chr2:31020329-31020330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:31020133..31021704-chr2:31026815..31029517,2	K562	blood:
2	chr2:31018858..31020682-chr2:31021635..31023770,2	MCF-7	breast:
3	chr2:31018837..31020739-chr2:31030184..31031808,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162949	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17010338	0.83[AMR][1000 genomes]
rs2364443	1.00[MEX][hapmap]
rs6718986	1.00[MEX][hapmap]
rs6734715	0.83[AMR][1000 genomes]
rs6740888	0.83[AMR][1000 genomes]
rs6749250	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30992000-31020400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:30999800-31021400	Weak transcription	Fetal Stomach	stomach
3	chr2:31000200-31021800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:31014200-31020800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:31016000-31021000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:31016000-31021200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:31016000-31021200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr2:31016000-31021200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:31016000-31021200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr2:31016200-31021200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr2:31019200-31021000	Enhancers	Fetal Lung	lung
12	chr2:31019200-31022200	Enhancers	Fetal Heart	heart
13	chr2:31019200-31022600	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr2:31019200-31022800	Enhancers	Stomach Mucosa	stomach
15	chr2:31019400-31022200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr2:31019400-31022600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr2:31019600-31020600	Enhancers	Fetal Intestine Small	intestine
18	chr2:31019600-31020600	Enhancers	Small Intestine	intestine
19	chr2:31019600-31020800	Enhancers	Pancreas	Pancrea
20	chr2:31019600-31022400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr2:31019800-31020400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr2:31019800-31020400	Enhancers	Gastric	stomach
23	chr2:31019800-31021400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr2:31019800-31021400	Enhancers	Right Atrium	heart
25	chr2:31019800-31021800	Enhancers	Left Ventricle	heart
26	chr2:31019800-31022000	Enhancers	Duodenum Mucosa	Duodenum
27	chr2:31019800-31022000	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr2:31019800-31022400	Enhancers	H1 Cell Line	embryonic stem cell
29	chr2:31019800-31022400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr2:31019800-31022600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr2:31019800-31022600	Enhancers	Brain Hippocampus Middle	brain
32	chr2:31020000-31020400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr2:31020000-31020600	Bivalent Enhancer	Esophagus	oesophagus
34	chr2:31020000-31020800	Weak transcription	Brain Substantia Nigra	brain
35	chr2:31020000-31021000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr2:31020000-31021000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr2:31020200-31020600	Weak transcription	Right Ventricle	heart

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