Variant report

Variant	rs17010858
Chromosome Location	chr2:124868621-124868622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10496624	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17010830	0.84[YRI][hapmap]
rs17010844	1.00[YRI][hapmap]
rs17010868	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17010871	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17010872	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17010906	1.00[YRI][hapmap]
rs17010914	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7584999	1.00[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124867400-124868800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr2:124867600-124870400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr2:124868400-124870200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:124868600-124870400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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