Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10496624	1.00[YRI][hapmap]
rs11123020	1.00[CEU][hapmap]
rs13426564	0.93[JPT][hapmap]
rs1439140	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17010758	0.94[JPT][hapmap]
rs17010759	0.94[JPT][hapmap]
rs17010772	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17010799	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs17010805	0.87[CEU][hapmap]
rs17010807	0.85[CEU][hapmap];0.96[EUR][1000 genomes]
rs17010830	0.83[YRI][hapmap]
rs17010844	1.00[YRI][hapmap]
rs17010858	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17010868	1.00[YRI][hapmap]
rs17010871	1.00[YRI][hapmap]
rs17010872	1.00[YRI][hapmap]
rs17010906	1.00[YRI][hapmap]
rs17010907	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17010914	1.00[YRI][hapmap]
rs17010955	1.00[CEU][hapmap]
rs17010963	1.00[CEU][hapmap]
rs17010972	1.00[CEU][hapmap]
rs1881793	1.00[CEU][hapmap]
rs1919837	1.00[CEU][hapmap]
rs61605355	0.93[EUR][1000 genomes]
rs951031	0.95[EUR][1000 genomes]
rs960536	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124849200-124851000	Enhancers	Fetal Intestine Small	intestine
2	chr2:124849400-124851000	Enhancers	Fetal Intestine Large	intestine
3	chr2:124850200-124850800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:124850400-124851800	Enhancers	Duodenum Mucosa	Duodenum

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