Variant report

Variant	rs11123020
Chromosome Location	chr2:124858689-124858690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1439140	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010758	0.93[TSI][hapmap]
rs17010759	0.93[TSI][hapmap]
rs17010772	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs17010799	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs17010805	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17010807	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17010907	1.00[CEU][hapmap]
rs17010955	1.00[CEU][hapmap]
rs17010963	1.00[CEU][hapmap]
rs17010972	1.00[CEU][hapmap]
rs1881793	1.00[CEU][hapmap]
rs1919837	1.00[CEU][hapmap]
rs61605355	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7584999	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs951031	0.86[JPT][hapmap];0.95[EUR][1000 genomes]
rs960536	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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