Variant report

Variant	rs1881793
Chromosome Location	chr2:124917657-124917658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11123020	1.00[CEU][hapmap]
rs12711668	0.90[YRI][hapmap]
rs1358670	0.90[YRI][hapmap]
rs1358671	1.00[YRI][hapmap]
rs1358672	1.00[YRI][hapmap]
rs1358673	1.00[YRI][hapmap]
rs1358674	0.90[YRI][hapmap]
rs1406659	1.00[YRI][hapmap]
rs1529293	0.90[YRI][hapmap]
rs1529302	0.90[YRI][hapmap]
rs1529303	0.90[YRI][hapmap]
rs1529304	1.00[YRI][hapmap]
rs1529305	1.00[YRI][hapmap]
rs1540892	1.00[YRI][hapmap]
rs17010772	0.85[CEU][hapmap]
rs17010799	0.85[CEU][hapmap]
rs17010805	0.85[CEU][hapmap]
rs17010807	0.82[CEU][hapmap]
rs17010907	1.00[CEU][hapmap]
rs17010944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17010955	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17010963	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17010972	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1919835	1.00[YRI][hapmap]
rs1919836	1.00[YRI][hapmap]
rs1919837	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.93[JPT][hapmap];1.00[TSI][hapmap]
rs1919844	0.90[YRI][hapmap]
rs1919847	1.00[YRI][hapmap]
rs1919849	1.00[YRI][hapmap]
rs2439004	0.90[YRI][hapmap]
rs2579815	0.85[YRI][hapmap]
rs2579822	0.90[YRI][hapmap]
rs2699368	1.00[YRI][hapmap]
rs2699369	0.90[YRI][hapmap]
rs2699370	0.90[YRI][hapmap]
rs2699371	0.90[YRI][hapmap]
rs2699373	0.90[YRI][hapmap]
rs4241118	0.85[YRI][hapmap]
rs4630769	0.90[YRI][hapmap]
rs6541937	0.90[YRI][hapmap]
rs6731948	0.90[YRI][hapmap]
rs6760870	0.83[YRI][hapmap]
rs7423056	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7579069	0.90[YRI][hapmap]
rs7584999	1.00[CEU][hapmap]
rs960536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960537	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];1.00[ASN][1000 genomes]
rs981455	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124917400-124918600	Weak transcription	Fetal Lung	lung

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