Variant report

Variant	rs6731948
Chromosome Location	chr2:124849793-124849794
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10181162	1.00[AMR][1000 genomes]
rs10196297	1.00[AMR][1000 genomes]
rs1213959	1.00[AMR][1000 genomes]
rs12470976	1.00[AMR][1000 genomes]
rs12711668	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12711669	1.00[AMR][1000 genomes]
rs12711670	1.00[AMR][1000 genomes]
rs13412940	1.00[AMR][1000 genomes]
rs1358670	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs1358671	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs1358672	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs1358673	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs1358674	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs1358675	1.00[AMR][1000 genomes]
rs1358676	1.00[AMR][1000 genomes]
rs1406659	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs1529293	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs1529300	1.00[AMR][1000 genomes]
rs1529302	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs1529303	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs1529304	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs1529305	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs1540892	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs1881793	0.90[YRI][hapmap]
rs1919834	1.00[AMR][1000 genomes]
rs1919835	0.90[YRI][hapmap]
rs1919836	0.90[YRI][hapmap]
rs1919844	0.81[YRI][hapmap]
rs1919845	1.00[AMR][1000 genomes]
rs1919846	1.00[AMR][1000 genomes]
rs1919847	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs1919848	1.00[AMR][1000 genomes]
rs1919849	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs2141541	1.00[AMR][1000 genomes]
rs2439004	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs2579815	0.95[YRI][hapmap]
rs2579822	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs2699368	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs2699369	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs2699370	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs2699371	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs2699372	1.00[AMR][1000 genomes]
rs2699373	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs4241118	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4505528	1.00[AMR][1000 genomes]
rs4630769	1.00[YRI][hapmap]
rs6541937	1.00[YRI][hapmap]
rs6740328	1.00[AMR][1000 genomes]
rs6747933	1.00[AMR][1000 genomes]
rs6760870	0.94[YRI][hapmap]
rs7567589	1.00[AMR][1000 genomes]
rs7579069	0.81[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124848800-124850000	Enhancers	Duodenum Mucosa	Duodenum
2	chr2:124849200-124850000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:124849200-124851000	Enhancers	Fetal Intestine Small	intestine
4	chr2:124849400-124851000	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links