Variant report

Variant	rs1358672
Chromosome Location	chr2:124926707-124926708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10181162	1.00[AMR][1000 genomes]
rs10196297	1.00[AMR][1000 genomes]
rs10204261	1.00[AMR][1000 genomes]
rs1213959	1.00[AMR][1000 genomes]
rs12470976	1.00[AMR][1000 genomes]
rs12711668	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12711669	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12711670	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13382328	1.00[AMR][1000 genomes]
rs13412940	1.00[AMR][1000 genomes]
rs13421371	1.00[AMR][1000 genomes]
rs13429933	1.00[AMR][1000 genomes]
rs1358670	0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358671	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358673	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358674	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358675	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358676	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1406659	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1529293	0.91[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1529300	1.00[AMR][1000 genomes]
rs1529302	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1529303	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1529304	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1529305	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1540892	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1881793	1.00[YRI][hapmap]
rs1919834	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1919835	1.00[YRI][hapmap]
rs1919836	1.00[YRI][hapmap]
rs1919844	0.91[YRI][hapmap]
rs1919845	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1919846	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1919847	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1919848	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1919849	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2141541	1.00[AMR][1000 genomes]
rs2439004	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2565757	1.00[AMR][1000 genomes]
rs2565758	1.00[AMR][1000 genomes]
rs2579815	0.86[YRI][hapmap]
rs2579822	0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2699368	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2699369	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2699370	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2699371	0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2699372	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2699373	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4241118	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs4505528	1.00[AMR][1000 genomes]
rs4630769	0.91[YRI][hapmap]
rs6541937	0.91[YRI][hapmap]
rs6731948	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6740328	1.00[AMR][1000 genomes]
rs6747933	1.00[AMR][1000 genomes]
rs6760870	0.83[YRI][hapmap]
rs7567589	1.00[AMR][1000 genomes]
rs7579069	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124925400-124928600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links