Variant report
| Variant | rs2565757 |
|---|---|
| Chromosome Location | chr2:125056175-125056176 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:125042727..125044673-chr2:125055207..125057776,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs10204261 | 1.00[AMR][1000 genomes] |
| rs12470976 | 1.00[AMR][1000 genomes] |
| rs12711668 | 1.00[AMR][1000 genomes] |
| rs12711669 | 1.00[AMR][1000 genomes] |
| rs12711670 | 1.00[AMR][1000 genomes] |
| rs13382328 | 1.00[AMR][1000 genomes] |
| rs13421371 | 1.00[AMR][1000 genomes] |
| rs13429933 | 1.00[AMR][1000 genomes] |
| rs1358670 | 1.00[AMR][1000 genomes] |
| rs1358671 | 1.00[AMR][1000 genomes] |
| rs1358672 | 1.00[AMR][1000 genomes] |
| rs1358673 | 1.00[AMR][1000 genomes] |
| rs1358674 | 1.00[AMR][1000 genomes] |
| rs1358675 | 1.00[AMR][1000 genomes] |
| rs1358676 | 1.00[AMR][1000 genomes] |
| rs1406659 | 1.00[AMR][1000 genomes] |
| rs1529293 | 1.00[AMR][1000 genomes] |
| rs1529300 | 1.00[AMR][1000 genomes] |
| rs1529302 | 1.00[AMR][1000 genomes] |
| rs1529303 | 1.00[AMR][1000 genomes] |
| rs1529304 | 1.00[AMR][1000 genomes] |
| rs1529305 | 1.00[AMR][1000 genomes] |
| rs1540892 | 1.00[AMR][1000 genomes] |
| rs1919834 | 1.00[AMR][1000 genomes] |
| rs1919845 | 1.00[AMR][1000 genomes] |
| rs1919846 | 1.00[AMR][1000 genomes] |
| rs1919847 | 1.00[AMR][1000 genomes] |
| rs1919848 | 1.00[AMR][1000 genomes] |
| rs1919849 | 1.00[AMR][1000 genomes] |
| rs2141541 | 1.00[AMR][1000 genomes] |
| rs2439004 | 1.00[AMR][1000 genomes] |
| rs2565758 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2579822 | 1.00[AMR][1000 genomes] |
| rs2699368 | 1.00[AMR][1000 genomes] |
| rs2699369 | 1.00[AMR][1000 genomes] |
| rs2699370 | 1.00[AMR][1000 genomes] |
| rs2699371 | 1.00[AMR][1000 genomes] |
| rs2699372 | 1.00[AMR][1000 genomes] |
| rs2699373 | 1.00[AMR][1000 genomes] |
| rs6740328 | 1.00[AMR][1000 genomes] |
| rs6747933 | 1.00[AMR][1000 genomes] |
| rs7579069 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv874989 | chr2:124892592-125176030 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv874990 | chr2:125038678-125099924 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:125056000-125056200 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
