Variant report

Variant	rs2699370
Chromosome Location	chr2:124926173-124926174
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10181162	1.00[AMR][1000 genomes]
rs10196297	1.00[AMR][1000 genomes]
rs10204261	1.00[AMR][1000 genomes]
rs1213959	1.00[AMR][1000 genomes]
rs12470976	1.00[AMR][1000 genomes]
rs12711668	0.81[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12711669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12711670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13382328	1.00[AMR][1000 genomes]
rs13412940	1.00[AMR][1000 genomes]
rs13421371	1.00[AMR][1000 genomes]
rs13429933	1.00[AMR][1000 genomes]
rs1358670	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358671	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358672	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358673	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358674	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1406659	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1529293	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1529300	1.00[AMR][1000 genomes]
rs1529302	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1529303	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1529304	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1529305	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1540892	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1881793	0.90[YRI][hapmap]
rs1919834	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1919835	0.90[YRI][hapmap]
rs1919836	0.90[YRI][hapmap]
rs1919844	1.00[YRI][hapmap]
rs1919845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1919846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1919847	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1919848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1919849	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2141541	1.00[AMR][1000 genomes]
rs2439004	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2565757	1.00[AMR][1000 genomes]
rs2565758	1.00[AMR][1000 genomes]
rs2579822	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2699368	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2699369	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2699371	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2699372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2699373	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4241118	1.00[AMR][1000 genomes]
rs4505528	1.00[AMR][1000 genomes]
rs4630769	0.81[YRI][hapmap]
rs6541937	0.81[YRI][hapmap]
rs6731948	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs6740328	1.00[AMR][1000 genomes]
rs6747933	1.00[AMR][1000 genomes]
rs7567589	1.00[AMR][1000 genomes]
rs7579069	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124925200-124926200	Enhancers	Fetal Stomach	stomach
2	chr2:124925400-124928600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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