Variant report

Variant	rs2579815
Chromosome Location	chr2:124831974-124831975
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12711668	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs1358671	0.85[YRI][hapmap]
rs1358672	0.86[YRI][hapmap]
rs1358673	0.84[YRI][hapmap]
rs1406659	0.85[YRI][hapmap]
rs1529304	0.84[YRI][hapmap]
rs1529305	0.86[YRI][hapmap]
rs1540892	0.84[YRI][hapmap]
rs1881793	0.85[YRI][hapmap]
rs1919835	0.85[YRI][hapmap]
rs1919836	0.85[YRI][hapmap]
rs1919847	0.86[YRI][hapmap]
rs1919849	0.85[YRI][hapmap]
rs2699368	0.85[YRI][hapmap]
rs4241118	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs4567938	1.00[AMR][1000 genomes]
rs4630769	0.95[YRI][hapmap]
rs6541937	0.95[YRI][hapmap]
rs6731948	0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs6760870	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2762279	chr2:124827023-124840027	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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