Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10496631	0.89[CEU][hapmap]
rs10496633	0.89[CEU][hapmap]
rs11675400	1.00[CEU][hapmap]
rs11677559	1.00[CEU][hapmap]
rs11686392	1.00[CEU][hapmap]
rs11689672	0.88[CEU][hapmap]
rs11694708	1.00[CEU][hapmap]
rs1358669	0.89[CEU][hapmap]
rs1430268	0.89[CEU][hapmap]
rs17010772	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17010807	0.96[EUR][1000 genomes]
rs17211596	1.00[CEU][hapmap]
rs17211765	1.00[CEU][hapmap]
rs17212475	1.00[CEU][hapmap]
rs17213071	1.00[CEU][hapmap]
rs17213092	1.00[CEU][hapmap]
rs17213203	1.00[CEU][hapmap]
rs17279088	1.00[CEU][hapmap]
rs17279639	1.00[CEU][hapmap]
rs17319680	0.89[CEU][hapmap]
rs17319771	0.89[CEU][hapmap]
rs17319827	0.89[CEU][hapmap]
rs17665763	0.87[CEU][hapmap]
rs17666092	0.89[CEU][hapmap]
rs17666152	0.80[CEU][hapmap]
rs17722007	0.89[CEU][hapmap]
rs17722506	0.89[CEU][hapmap]
rs17722749	0.89[CEU][hapmap]
rs2420554	1.00[CEU][hapmap]
rs2901195	1.00[CEU][hapmap]
rs4563225	1.00[CEU][hapmap]
rs61605355	0.93[EUR][1000 genomes]
rs7584999	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs951031	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124847400-124849400	Weak transcription	Fetal Intestine Large	intestine
2	chr2:124847600-124849200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:124847600-124849200	Weak transcription	Fetal Intestine Small	intestine

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