Variant report

Variant	rs10496633
Chromosome Location	chr2:124986652-124986653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10496631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11123042	1.00[CHB][hapmap]
rs11675400	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11677559	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11678185	1.00[ASN][1000 genomes]
rs11686392	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11689672	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11694708	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1213971	1.00[CHB][hapmap]
rs12373656	1.00[CHB][hapmap]
rs1358669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1430251	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1430268	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1439140	0.89[CEU][hapmap]
rs1529296	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17211596	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17211765	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17212475	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17213071	1.00[CHB][hapmap]
rs17213092	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17213203	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17270902	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17279088	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17319464	1.00[CHB][hapmap]
rs17319680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17319771	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17319827	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17665763	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17665782	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17666092	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17666152	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17666488	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17667754	1.00[AFR][1000 genomes]
rs17673411	1.00[AFR][1000 genomes]
rs17722007	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17722506	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17722749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725595	1.00[CHB][hapmap]
rs2420554	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs2901195	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs4563225	1.00[CHB][hapmap]
rs62171029	1.00[ASN][1000 genomes]
rs73954526	1.00[ASN][1000 genomes]
rs73954528	1.00[ASN][1000 genomes]
rs779988	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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