Variant report

Variant	rs10496631
Chromosome Location	chr2:125015444-125015445
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10496633	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11123042	1.00[CHB][hapmap]
rs11675400	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11677559	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11678185	1.00[ASN][1000 genomes]
rs11686392	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11689115	1.00[CHB][hapmap]
rs11694708	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12373656	1.00[CHB][hapmap]
rs1358669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1430251	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1430268	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1439140	0.89[CEU][hapmap]
rs1529296	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1574504	1.00[CHB][hapmap]
rs17211596	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17211765	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17212475	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17213071	1.00[CHB][hapmap]
rs17213092	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17213203	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17279088	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17319464	1.00[CHB][hapmap]
rs17319680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17319771	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17319827	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17665763	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17665782	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17666092	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17666152	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17666488	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17667754	1.00[AFR][1000 genomes]
rs17673411	1.00[AFR][1000 genomes]
rs17722007	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17722506	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17722749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725595	1.00[CHB][hapmap]
rs17725619	1.00[CHB][hapmap]
rs2003039	1.00[CHB][hapmap]
rs2420554	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs2901195	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs4563225	1.00[CHB][hapmap]
rs62171029	1.00[ASN][1000 genomes]
rs73954526	1.00[ASN][1000 genomes]
rs73954528	1.00[ASN][1000 genomes]
rs779988	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125014400-125016200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:125015000-125016200	Enhancers	NHLF	lung
3	chr2:125015200-125015600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:125015400-125016200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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