Variant report

Variant	rs11689115
Chromosome Location	chr2:125204285-125204286
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10445856	1.00[CHB][hapmap]
rs10445857	1.00[CHB][hapmap]
rs10496631	1.00[CHB][hapmap]
rs11123041	1.00[CEU][hapmap]
rs11123042	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs11123043	1.00[CEU][hapmap]
rs11680355	1.00[CEU][hapmap]
rs11888989	1.00[CHB][hapmap]
rs12373656	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1304052	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1358669	1.00[CHB][hapmap]
rs1394144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs1394145	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs1430251	1.00[CHB][hapmap]
rs1430268	1.00[CHB][hapmap]
rs1503997	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs1504000	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs1504002	0.87[EUR][1000 genomes]
rs1574504	1.00[CHB][hapmap]
rs17320237	1.00[CHB][hapmap]
rs17392197	1.00[CHB][hapmap]
rs17666092	1.00[CHB][hapmap]
rs17666152	1.00[CHB][hapmap]
rs17722007	1.00[CHB][hapmap]
rs17722506	1.00[CHB][hapmap]
rs17722749	1.00[CHB][hapmap]
rs17725356	1.00[CEU][hapmap]
rs17725595	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17725619	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs1827596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs1835353	1.00[CEU][hapmap]
rs1847429	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs2003039	1.00[CHB][hapmap]
rs2089104	0.87[EUR][1000 genomes]
rs2584356	0.94[CEU][hapmap]
rs4555349	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4848936	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6541957	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6541961	1.00[CHB][hapmap]
rs6708079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[ASN][1000 genomes]
rs6711296	0.87[EUR][1000 genomes]
rs6722877	1.00[ASN][1000 genomes]
rs7594672	1.00[CEU][hapmap]
rs869760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs905630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834355	chr2:125128585-125291043	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125204200-125204400	Enhancers	Pancreas	Pancrea
2	chr2:125204200-125204600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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