Variant report

Variant	rs17666152
Chromosome Location	chr2:125035022-125035023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10496631	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496633	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs11123042	1.00[CHB][hapmap]
rs11675400	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11678185	1.00[ASN][1000 genomes]
rs11686392	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11689115	1.00[CHB][hapmap]
rs11694708	1.00[CHB][hapmap]
rs12373656	1.00[CHB][hapmap]
rs1358669	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1430251	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs1430268	0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1439140	0.80[CEU][hapmap]
rs1529296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1574504	1.00[CHB][hapmap]
rs17212475	1.00[CHB][hapmap]
rs17213071	1.00[CHB][hapmap]
rs17213092	1.00[CHB][hapmap]
rs17213203	1.00[CHB][hapmap]
rs17279088	1.00[CHB][hapmap]
rs17319464	1.00[CHB][hapmap]
rs17319680	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17319771	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs17319827	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs17665763	0.90[CEU][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17665782	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17666092	0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17666488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17667754	1.00[AFR][1000 genomes]
rs17673411	1.00[AFR][1000 genomes]
rs17722007	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17722506	0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17722749	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725595	1.00[CHB][hapmap]
rs17725619	1.00[CHB][hapmap]
rs2003039	1.00[CHB][hapmap]
rs2420554	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs2901195	1.00[CHB][hapmap]
rs4563225	1.00[CHB][hapmap]
rs62171029	1.00[ASN][1000 genomes]
rs779988	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125025800-125041200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:125034400-125035600	Enhancers	Fetal Intestine Large	intestine
3	chr2:125034600-125035400	Enhancers	Fetal Intestine Small	intestine

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