Variant report
| Variant | rs779988 |
|---|---|
| Chromosome Location | chr2:125000429-125000430 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10496631 | 1.00[ASN][1000 genomes] |
| rs11675400 | 1.00[ASN][1000 genomes] |
| rs11678185 | 1.00[ASN][1000 genomes] |
| rs11686392 | 1.00[ASN][1000 genomes] |
| rs11694708 | 1.00[ASN][1000 genomes] |
| rs1170619 | 0.91[AFR][1000 genomes] |
| rs1170621 | 0.91[AFR][1000 genomes] |
| rs1184930 | 0.80[AFR][1000 genomes] |
| rs1430268 | 1.00[ASN][1000 genomes] |
| rs1529296 | 1.00[ASN][1000 genomes] |
| rs17212475 | 1.00[ASN][1000 genomes] |
| rs17319680 | 1.00[ASN][1000 genomes] |
| rs17665763 | 1.00[ASN][1000 genomes] |
| rs17665782 | 1.00[ASN][1000 genomes] |
| rs17666092 | 1.00[ASN][1000 genomes] |
| rs17666152 | 1.00[ASN][1000 genomes] |
| rs17666488 | 1.00[ASN][1000 genomes] |
| rs17722007 | 1.00[ASN][1000 genomes] |
| rs17722506 | 1.00[ASN][1000 genomes] |
| rs17722749 | 1.00[ASN][1000 genomes] |
| rs62171029 | 1.00[ASN][1000 genomes] |
| rs73954526 | 1.00[ASN][1000 genomes] |
| rs73954528 | 1.00[ASN][1000 genomes] |
| rs749196 | 0.83[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531408 | chr2:124727329-125011247 | Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv874989 | chr2:124892592-125176030 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:124999800-125001200 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
