Variant report

Variant	rs11686392
Chromosome Location	chr2:124869037-124869038
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10496631	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10496633	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11675400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677559	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11677801	1.00[ASN][1000 genomes]
rs11678185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680010	1.00[ASN][1000 genomes]
rs11680902	1.00[ASN][1000 genomes]
rs11683942	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11687196	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11689672	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693472	1.00[ASN][1000 genomes]
rs11693557	1.00[ASN][1000 genomes]
rs11694708	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1213971	1.00[CHB][hapmap]
rs1358669	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1430251	1.00[CHB][hapmap]
rs1430268	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1439131	1.00[CHB][hapmap]
rs1439140	1.00[CEU][hapmap]
rs1529296	1.00[ASN][1000 genomes]
rs17011309	1.00[LWK][hapmap]
rs17209500	1.00[ASN][1000 genomes]
rs17211596	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17211765	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17212475	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17213071	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17213092	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs17213203	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17269066	1.00[ASN][1000 genomes]
rs17269122	1.00[ASN][1000 genomes]
rs17270902	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17279088	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17279639	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17319464	1.00[CHB][hapmap]
rs17319680	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17319771	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17319827	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17665763	1.00[ASN][1000 genomes]
rs17665782	1.00[ASN][1000 genomes]
rs17666092	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17666152	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17666488	1.00[ASN][1000 genomes]
rs17722007	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17722506	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17722749	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2420554	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2901195	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4563225	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs73954526	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73954528	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs779988	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124867600-124870400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr2:124868400-124870200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:124868600-124870400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:124868800-124870200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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