Variant report

Variant	rs11689672
Chromosome Location	chr2:124803479-124803480
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:124799189..124801120-chr2:124803368..124805161,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10496633	1.00[CHB][hapmap]
rs11675400	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677559	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs11677801	1.00[ASN][1000 genomes]
rs11678185	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680010	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680902	1.00[ASN][1000 genomes]
rs11686392	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693472	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693557	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694708	0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1213971	1.00[CHB][hapmap]
rs1439131	1.00[CHB][hapmap]
rs1439140	0.88[CEU][hapmap]
rs17209500	1.00[ASN][1000 genomes]
rs17211596	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs17211765	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs17212475	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17213071	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs17213092	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs17213203	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs17269066	1.00[ASN][1000 genomes]
rs17269122	1.00[ASN][1000 genomes]
rs17270902	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17279088	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs17279639	0.89[CEU][hapmap]
rs17319464	1.00[CHB][hapmap]
rs17319680	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17319771	1.00[CHB][hapmap]
rs17319827	1.00[CHB][hapmap]
rs2420554	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs2901195	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs4563225	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs73954526	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73954528	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124803000-124805600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr2:124803200-124804200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:124803400-124804000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:124803400-124804000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:124803400-124804200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:124803400-124804200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:124803400-124805200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:124803400-124806000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr2:124803400-124807400	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links